yxiD [2019-07-16 08:47:05]

toxin

locus: BSU_39300

pI: 9.40

mw: 64.13 kDa

protein length: 569 aa

gene length: 1710 bp

function: unknown

product: toxin

essential: no

synonyms

Genomic Context

categories

• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.17|Toxins, antitoxins and immunity against toxins] → [category|SW 4.3.17.2|Type 2 TA systems]
• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.18|Toxins, antitoxins and immunity against toxins/ based on similarity]

Gene

Coordinates: 4,036,784 → 4,038,493

The protein

Protein family

• UPF0720 family (according to Swiss-Prot)

Expression and Regulation

Operons

• genes: [gene|75B0239578C92D4F3B298CBB077635BF5567C590|yxiB]-[gene|F44437883F39E5240D36340A7DD07803C5090ABB|yxiC]-[gene|BD8C0563C7123B6DEC1EEB602BDF2C9D92D34991|yxiD]-[gene|0DAFBDDC5E41592D06F97D404E75AF14B6783729|yxxD]-[gene|2710D9FD5FA50E09B4E482C13140F69B13C71861|yxxE]
  description: [Pubmed|22383849,7883710,10746760]

Biological materials

Mutant

• MGNA-B717 (yxiD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1716 NBRP B. subtilis, Japan]
• BKE39300 (Δ[gene|BD8C0563C7123B6DEC1EEB602BDF2C9D92D34991|yxiD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE39300 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATCCCTTGTCCTCCCGCG, downstream forward: _UP4_AAATGAGTTATAATTTTATA
• BKK39300 (Δ[gene|BD8C0563C7123B6DEC1EEB602BDF2C9D92D34991|yxiD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK39300 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATCCCTTGTCCTCCCGCG, downstream forward: _UP4_AAATGAGTTATAATTTTATA

References

• 7883710,10746760,22200572